Open Access
| Issue |
BIO Web Conf.
Volume 55, 2022
5th International Conference on Frontiers of Biological Sciences and Engineering (FBSE 2022)
|
|
|---|---|---|
| Article Number | 01003 | |
| Number of page(s) | 7 | |
| DOI | https://doi.org/10.1051/bioconf/20225501003 | |
| Published online | 21 November 2022 | |
- Xiao CL, Chen XZ, Du YL, et al. Dispec: A Novel Peptide Scoring Algorithm Based on Peptide Matching Discriminability[J]. Plos One, 2013, 8: e62724-e62724. [PubMed] [Google Scholar]
- Geer LY, Markey SP, Kowalak JA, et al. Open Mass Spectrometry Search Algorithm. Journal of Proteome Research 2004, 3: 958-964. [CrossRef] [PubMed] [Google Scholar]
- Bafna V, Edwards N. SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database. Bioinformatics 2001, 17: 13-21. [Google Scholar]
- Bjornson RD, Carriero N J, Colangelo C, et al et al. X!!Tandem, an improved method for running X!tandem in parallel on collections of commodity computers. Journal of Proteome Research 2008, 7: 293-299. [CrossRef] [PubMed] [Google Scholar]
- Chi H, Sun RX, Yang B, et al. pNovo: de novo peptide sequencing and identification using HCD spectra. Journal of Proteome Research 2014, 9: 2713-2724. [Google Scholar]
- Chick JM, Gygi SP, Nusinow DP, et al. A masstolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides. Nature Biotechnology 2015, 33: 882-882. [CrossRef] [PubMed] [Google Scholar]
- Dorfer V, Pichler P, Stranzl T, et al. MS Amanda, a Universal Identification Algorithm Optimized for High Accuracy Tandem Mass Spectra.[J]. Journal of Proteome Research, 2014, 13: 3679-3684. [CrossRef] [PubMed] [Google Scholar]
- Eriksson J, Fenyö D. Probity: a protein identification algorithm with accurate assignment of the statistical significance of the results. Journal of Proteome Research 2004, 3: 32-36. [CrossRef] [PubMed] [Google Scholar]
- Goeminne LJ, Gevaert K, Clement L. Experimental design and data-analysis in label-free quantitative LC/MS proteomics: A tutorial with MSqRob. Journal of Proteomics 2018, 171: 23-36. [CrossRef] [PubMed] [Google Scholar]
- Jian L, Niu X, Xia Z, et al. A Novel Algorithm for Validating Peptide Identification from a Shotgun Proteomics Search Engine. Journal of Proteome Research 2013, 12: 1108. [CrossRef] [PubMed] [Google Scholar]
- Käll L, Storey JD, Maccoss MJ, et al. Assigning significance to peptides identified by tandem mass spectrometry using decoy databases. Journal of Proteome Research 2008, 7: 29-34. [CrossRef] [PubMed] [Google Scholar]
- Li D, Fu Y, Sun R, et al. pFind: a novel database - searching software system for automated peptide and protein identification via tandem mass spectrometry. Bioinformatics 2005, 21: 3049-3050. [CrossRef] [PubMed] [Google Scholar]
- Li W, Ji L, Goya J, et al. SQID: An intensity – incorporated protein identification algorithm for tandem mass spectrometry. Journal of Proteome Research 2011, 10: 1593-1602. [CrossRef] [PubMed] [Google Scholar]
- Lin MS, Cherny JJ, Fournier CT, et al. Assessment of MS/MS SearchAlgorithms with Parent- ProteinProfiling. Journal of Proteome Research 2014, 13: 1823-1832. [CrossRef] [PubMed] [Google Scholar]
- Perkins DN, Pappin DJC, Creasy DM, et al. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20: 3551-3567. [CrossRef] [PubMed] [Google Scholar]
- Lelong C. Two-dimensional gel electrophoresis in proteomics: Past, present and future. Journal of Proteomics 2010, 73: 2064-2077. [CrossRef] [PubMed] [Google Scholar]
- Townsend C, Furukawa A, Schwochert J, et al. CycLS: Accurate, whole-library sequencing of cyclic peptides using tandem mass spectrometry. Bioorganic & Medicinal Chemistry 2018, 6: 1232-1238. [CrossRef] [PubMed] [Google Scholar]
- Xiao CL, Chen XZ, Du YL, et al. Binomial probability distribution model-based protein identification algorithm for tandem mass spectrometry utilizing peak intensity information. Journal of proteome research 2013, 12: 328-335. [CrossRef] [PubMed] [Google Scholar]
- Yadav AK, Kumar D, Dash D. MassWiz: a novel scoring algorithm with target-decoy based analysis pipeline for tandem mass spectrometry. Journal of proteome research 2011, 10: 2154-2160. [CrossRef] [PubMed] [Google Scholar]
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