Open Access
| Issue |
BIO Web Conf.
Volume 123, 2024
The 1st International Seminar on Tropical Bioresources Advancement and Technology (ISOTOBAT 2024)
|
|
|---|---|---|
| Article Number | 01028 | |
| Number of page(s) | 7 | |
| Section | Agriculture, Animal Sciences, Agroforestry, and Agromaritime Innovation | |
| DOI | https://doi.org/10.1051/bioconf/202412301028 | |
| Published online | 30 August 2024 | |
- M. Fisher, Moving science forward through: Meta-analysis, (CSA News, 2015) [Google Scholar]
- H.D. Toler, R.M. Augé, V. Benelli, F.L. Allen, A.J. Ashworth, Global meta-analysis of cotton yield and weed suppression from cover crops, CSSA. 59, 1248-1260 (2019) [Google Scholar]
- Soenarno, S. Astana, Lacak balak untuk verifikasi uji legalitas kayu pada pemanenan kayu hutan alam, JPHT. 36, 47-58 (2018) [Google Scholar]
- D. Kovalic, C. Garnaa, L. Guo, Y. Yan, J. Groat, A. Silvanovich, The use of next generation sequencing and junction sequence analysis bioinformatics to achieve molecular characterization of crops improved through modern biotechnology, Plant Genome. 5, 149-163 (2022) [Google Scholar]
- B. Guo, Y. Guo, H. Hong, L.J. Qiu, Identification of genomic insertion and flanking sequence of G2-EPSPS and GAT transgenes in soybean using whole genome sequencing method, Front. Plant Sci. 7, 1009 (2016) [Google Scholar]
- S.K. Guttikonda, P. Marri, J. Mammadov, L. Ye, K. Soe, K. Richey, Molecular characterization of transgenic events using next generation sequencing approach, PLoS One. 11, e0149515 (2016) [CrossRef] [Google Scholar]
- L. Yang, C. Wang, A. Holst-Jensen, D. Morisset, Y. Lin, D. Zhang, Characterization of GM events by insert knowledge adapted re-sequencing approaches, Sci. Rep. 3, 2839 (2013) [CrossRef] [Google Scholar]
- D. Park, D. Kim, G. Jang, J. Lim, Y.J. Shin, J. Kim, Efficiency to discovery transgenic loci in GM rice using next generation sequencing whole genome re-sequencing, Genom. Inform. 13, 81-85 (2015) [CrossRef] [Google Scholar]
- D. Park, S.H. Park, Y.W. Ban, Y.S. Kim, K.C. Park, N.S. Kim, A bioinformatics approach for identifying transgene insertion sites using whole genome sequencing data, BMC Biotechnol. 17, 67 (2017) [CrossRef] [Google Scholar]
- Y. Zhang, H. Zhang, Z. Qu, X. Zhang, J. Cu, C. Wang, Comprehensive analysis of the molecular characterization of GM rice G6H1 using a paired-end sequencing approach, Food Chem. 309, 125760 (2020) [CrossRef] [Google Scholar]
- R. Cade, K. Burgin, K. Schilling, T.J. Lee, P. Ngam, N. Devitt, Evaluation of whole genome sequencing and an insertion site characterization method for molecular characterization of GM maize, J. Regul. Sci. 6, 1-14 (2018) [Google Scholar]
- J. Jin, M. Lee, B. Bai, Y. Sun, J. Qu, Rahmadsyah, Y. Alfiko, C.H. Lim, A. Suwanto, M. Sugiharti, L. Wong, J. Ye, N.H. Chua, G.H. Yue, Draft genome sequence of an elite Dura palm and whole-genome patterns of DNA variation in oil palm, Dna Res. 23, 527-533 (2016) [CrossRef] [PubMed] [Google Scholar]
- Y. Yang, S. Bocs, H. Fan, Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance, Commun. Biol. 4, 1-14 (2021) [CrossRef] [Google Scholar]
- Y. Yang, L. Huang, C. Xu, L. Qi, Z. Wu, J. Li, H. Chen, Y. Wu, T. Fu, H. Zhu, M.A. Saand, J. Li, L. Liu, H. Fan, H. Zhou, W. Qin, Chromosome-scale genome assembly of areca palm (Areca catechu), Mol Ecol. Resour. 21, 1-16 (2021) [CrossRef] [PubMed] [Google Scholar]
- K.M. Hazzouri, M. Gros-Balthazard, J.M. Flowers, D. Copetti, A. Lemansour, M. Lebrun, M.D. Purugganan, Genome-wide association mapping of date palm fruit traits, Nat. Commun. 10, 4680 (2019) [CrossRef] [Google Scholar]
- C. Liu, J. Li, G. Qin, Genome-wide distribution of simple sequence repeats in pomegranate and their application to the analysis of genetic diversity, Tree Genet. Genomes. 16, 1-9 (2020) [CrossRef] [Google Scholar]
- J. Ping, P. Feng, J. Li, R. Zhang, Y. Su, T. Wang, Molecular evolution and SSRs analysis based on the chloroplast genome of Callitropsis funebris, Ecol. Evol. 11, 4786-4802 (2021) [CrossRef] [Google Scholar]
- M. Zhao, G. Shu, Y. Hu, G. Cao, Y. Wang, Pattern and variation in simple sequence repeat (SSR) at different genomic regions and its implications to maize evolution and breeding, BMC Genomics. 24, 136 (2023) [CrossRef] [Google Scholar]
- M.R. Romadhon, S. Sobir, W.B. Suwarno, D.D. Matra, Profile microsatellite mining of whole genome sequencing and transcriptomic assembly in dwarf and tall areca nut (Areca catechu) in Indonesia, Biodiversitas J. Biol. Divers. 25, (2024) [CrossRef] [Google Scholar]
- M.M. Manee, B.M. Al-Shomrani, M.B. Al-Fageeh, Genome-wide characterization of simple sequence repeats in Palmae genomes, Genes Genom. 42, 597-608 (2020) [CrossRef] [PubMed] [Google Scholar]
- P. Calabrese, R. Durrett, Dinucleotide Repeats in the Drosophila and Human Genomes Have Complex, Length-Dependent Mutation Processes, Mol. Biol. Evol. 20, 715-725 (2003) [CrossRef] [Google Scholar]
- R.K. Kalia, M.K. Rai, S. Kalia, R. Singh, A.K. Dhawan, Microsatellite markers: an overview of the recent progress in plants, Euphytica. 177, 309-334 (2011) [CrossRef] [Google Scholar]
- M. Zhao, G. Shu, Y. Hu, et al., Pattern and variation in simple sequence repeat (SSR) at different genomic regions and its implications to maize evolution and breeding, BMC Genomics. 24, 136 (2023) [CrossRef] [Google Scholar]
- S. Liu, Y. An, F. Li, et al., Genome-wide identification of simple sequence repeats and development of polymorphic SSR markers for genetic studies in tea plant (Camellia sinensis), Mol. Breeding. 38, 59 (2018) [CrossRef] [Google Scholar]
- M.Z. Iqbal, S. Jamil, R. Shahzad, K. Bilal, R. Qaisar, A. Nisar, M.K. Bhatti, DNA fingerprinting of crops and its applications in the field of plant breeding, J. Agric. Res. 59, (2021) [Google Scholar]
- K. Sunilkumar, P. Murugesan, R.K. Mathur, M.K. Rajesh, Genetic diversity in oil palm (Elaeis guineensis and Elaeis oleifera) germplasm as revealed by microsatellite (SSR) markers, Ind. J. Agric. Sci. 90, 741-745 (2020) [CrossRef] [Google Scholar]
- M.R. Romadhon, Sobir, W.B. Suwarno, D.D. Matra, Development of Microsatellite Markers to Determine Genetic Diversity of Indonesian Betel Nut (Areca catechu L.), in Proceedings of the Nusantara Science and Technology Proceedings, Multi-Conference Proceeding Series D, January 5-13, (2023), 8-13 [Google Scholar]
- M.S. Rahayu, A. Setiawan, I. Maskromo, A. Purwito, S. Sudarsono, Genetic diversity analysis of Puan Kalianda kopyor coconuts (Cocos nucifera) from South Lampung, Indonesia based on SSR markers, Biodiversitas J. Biol. Divers. 23, (2022) [Google Scholar]
- D.Y. Rinawati, R. Reflinur, D. Dinarti, S. Sudarsono, Genetic diversity of sugar palm (Arenga pinnata) derived from nine regions in Indonesia based on SSR markers, Biodiversitas J. Biol. Divers. 22, (2021) [CrossRef] [Google Scholar]
- J.A. Mantiquilla, M.S. Shiao, H.Y. Lu, K. Sridith, S.N.M. Sidique, W.K. Liyanage, Y.C. Chiang, Deep structured populations of geographically isolated nipa (Nypa fruticans Wurmb.) in the Indo-West Pacific revealed using microsatellite markers, Front. Plant Sci. 13, 1038998 (2022) [CrossRef] [Google Scholar]
Current usage metrics show cumulative count of Article Views (full-text article views including HTML views, PDF and ePub downloads, according to the available data) and Abstracts Views on Vision4Press platform.
Data correspond to usage on the plateform after 2015. The current usage metrics is available 48-96 hours after online publication and is updated daily on week days.
Initial download of the metrics may take a while.