Preliminary screening of rhizosphere bacteria in shallot plants grown in organic field as antagonists against Fusarium oxysporum f.sp. cepae

Open Access

Issue		BIO Web Conf. Volume 210, 2026 The 8^th International Conference on Food and Agriculture (ICoFA 2025)


Article Number		02018
Number of page(s)		9
Section		Agricultural Production and Agricultural Technology
DOI		https://doi.org/10.1051/bioconf/202621002018
Published online		15 January 2026

G. F. Dinata, L. Q. Aini, and A. L. Abadi, In vitro evaluation of the effect of combined indigenous antagonistic bacteria against Fusarium oxysporum. Int. J. Agric. Syst., 11, 1, 55–64 (2023). [Google Scholar]
I. Mahmood, S. R. Imadi, K. Shazadi, A. Gul, K. Rehman, and M. S. Hakeem, Effects of pesticides on environment. Plant Soil Microbes, 1, 1–366 (2016). https://doi.org/10.1007/978-3-319-27455-3 [Google Scholar]
W. D. Novitasari and A. Munif, Potency of some endophytic bacteria isolates for biocontrol of Fusarium oxysporum f.sp. cepae on shallot. J. Fitopatol. Indones., 16, 5, 227–234 (2020). https://doi.org/10.14692/jfi.16.5.227-234 [Google Scholar]
H. Li, X. Cai, J. Gong, T. Xu, G. Ding, and J. Li, Long-term organic farming manipulated rhizospheric microbiome and Bacillus antagonism against pepper blight (Phytophthora capsici). Front. Microbiol., 10, 342 (2019). [Google Scholar]
T. Tang, X. Sun, Q. Liu, Y. Dong, and M. Zha, Treatment with organic manure inoculated with a biocontrol agent induces soil bacterial communities to inhibit tomato Fusarium wilt disease. Front. Microbiol., 13, 1006878 (2023). [Google Scholar]
S. Purwantisari and R. B. Hastuti, Isolasi dan identifikasi jamur indigenous rhizosfer tanaman kentang dari lahan pertanian kentang organik di Desa Pakis, Magelang. Bioma, 11, 2, 45–53 (2012). https://doi.org/10.14710/bioma.11.2.45-53 [Google Scholar]
M. T. Madigan and J. M. Martinko, Brock biology of microorganisms, 11th ed. Int. Microbiol., 8, 149–152 (2006). https://doi.org/10.1207/s15389286ajde2002_6 [Google Scholar]
E. Siswadi, N. B. E. Sulistyono, R. Firgiyanto, G. F. Dinata, and Suharjono, Exploration of bacterial diversity from the soil of citrus plantations applied with organic fertilizer and salicylic acid. IOP Conf. Ser. Earth Environ. Sci., 1168, 1, 012019 (2023). https://doi.org/10.1088/1755-1315/1168/1/012019 [Google Scholar]
Mardhiana, A. P. Pradana, M. Adiwena, D. Santoso, R. Wijaya, and A. Murtilaksono, Use of endophytic bacteria from roots of Cyperus rotundus for biocontrol of Meloidogyne incognita. Biodiversitas, 18, 4, 1308–1315 (2017). https://doi.org/10.13057/biodiv/d180404 [Google Scholar]
G. F. Dinata, L. Q. Aini, and R. R. Kusuma, Identification and characterization of antagonistic bacteria from coffee plant litter. Agrotechnol. Res. J., 5, 1, 32–37 (2021). https://doi.org/10.20961/agrotechresj.v5i1.49716 [Google Scholar]
E. N. Herliyana, R. Jamilah, D. Taniwiryono, and A. Firmansyah, Uji in vitro pengendalian hayati oleh Trichoderma spp. terhadap Ganoderma yang menyerang sengon. Silvikultur Trop., 4, 3, 190–195 (2013). [Google Scholar]
V. Hani, P. Sakti, A. D. Widura, A. D. Maulana, Z. A. Wiya, R. A. Rofiqoh, et al., Potential of termite symbiotic bacteria as biological control agents for seedling damping-off disease (Sclerotium rolfsii) in soybean plants in vitro. Gontor Agrotech Sci. J., 10, 2 (2024). https://doi.org/10.21111/agrotech.v10i2.13110 [Google Scholar]
X. Zhao, Z. Yu, and T. Ding, Quorum-sensing regulation of antimicrobial resistance in bacteria. Microorganisms, 8, 3, 1–21 (2020). https://doi.org/10.3390/microorganisms8030425 [Google Scholar]
T. Widowati, S. Rumella, L. Nurjanah, Nuriyanah, and S. Lekatompessy, Aktivitas pemacu pertumbuhan tanaman dari bakteri endofit bawang merah (Allium cepa L.). J. Ilmu Lingkung., 22, 4, 887–893 (2024). https://doi.org/10.14710/jil.22.4.887-893 [Google Scholar]
A. W. I. Prasetya, Y. S. Rahayu, and Trimulyono, Isolation and characterization of chitinolytic endophytic bacteria on shallot (Allium ascalonicum) and its potency to inhibit Fusarium oxysporum growth. LenteraBio, 7, 1, 1–8 (2018). [Google Scholar]
Y. Huang, Illumina-based analysis of endophytic bacterial diversity of four Allium species. Sci. Rep., 9, 1, 15271 (2019). [Google Scholar]
J. Lee, S. Kim, H. Jung, B.-K. Koo, J. A. Han, and H.-S. Lee, Exploiting bacterial genera as biocontrol agents: mechanisms, interactions and applications in sustainable agriculture. J. Plant Biol., 66, 6, 485–498 (2023). [Google Scholar]
R. D. Sari, E. T. Tondok, D. Dinarti, and S. H. Hidayat, Potential of endophytic microbes in suppressing basal rot disease in shallot plants. J. Fitopatol. Indones., 20, 3, 115–125 (2024). [Google Scholar]
H. Susanti, F. Rianto, and E. Syahputra, Bakteri PGPR rizosfer bambu sebagai agens biokontrol penyakit moler. J. Fitopatol. Indones., 20, 5 (2024). [Google Scholar]
B. Shiva, P. Srinivas, D. Khulbe, L. Rithesh, P. K. Varma, R. Tiwari, et al., Isolation and characterization of native antagonistic rhizobacteria against Fusarium wilt of chilli to promote plant growth. PeerJ, 12 (2024). https://doi.org/10.7717/peerj.17578 [Google Scholar]
S. Carmona-Hernandez, J. J. Reyes-Perez, R. G. Chiquito-Contreras, G. Rincon- Enriquez, C. R. Cerdan-Cabrera, and L. G. Hernandez-Montiel, Biocontrol of postharvest fruit fungal diseases by bacterial antagonists: a review. Agronomy, 9, 3, 121 (2019). https://doi.org/10.3390/agronomy9030121 [Google Scholar]
B. Agirman and H. Erten, Biocontrol ability and action mechanisms of Aureobasidium pullulans GE17 and Meyerozyma guilliermondii KL3 against Penicillium digitatum and Penicillium expansum. Yeast, 37, 437–448 (2020). https://doi.org/10.1002/yea.3501 [Google Scholar]
D. Spadaro and S. Droby, Development of biocontrol products for postharvest diseases of fruit: the importance of elucidating the mechanisms of action of yeast antagonists. Trends Food Sci. Technol., 47, 39–49 (2016). https://doi.org/10.1016/j.tifs.2015.11.003 [Google Scholar]
Y. Suryadi, D. Susilowati, and I. M. Samudra, Selection of rhizosphere bacterial isolates and development of antagonistic bacterial-based formulation to control Fusarium wilt on shallot. Bul. Plasma Nutfah, 26, 2, 89–102 (2020). https://doi.org/10.21082/blpn.v26n2.2020.p89-102 [Google Scholar]
A. Saputra, N. Prihatiningsih, H. Djatmiko, and D. Kurniawan, Isolation, characterization, and selection of Bacillus sp. from shallot rhizosphere that inhibits Fusarium oxysporum growth. J. Perlindungan Tanam Indones. (2024). https://doi.org/10.22146/jpti.89634 [Google Scholar]
I. Mahmuda, A. Saylendra, E. Sulistyorini, and S. Isminingsih, Uji potensi isolat rhizobakteri menekan pertumbuhan jamur antraknosa cabai merah (Capsicum annum L.) secara in vitro. J. Ilm. Membangun Desa Pertan., 9, 6, 572–582 (2024). [Google Scholar]
R. P. Annura, Syamsyuddin, and Halimursyadah, Characterization of rhizobacteria as biocontrol agents and in vitro test of Fusarium oxysporum f.sp. lycopersici on tomato plants and its role as plant growth promoting. J. Agrista, 25, 2, 50–59 (2021). [Google Scholar]

Current usage metrics show cumulative count of Article Views (full-text article views including HTML views, PDF and ePub downloads, according to the available data) and Abstracts Views on Vision4Press platform.

Data correspond to usage on the plateform after 2015. The current usage metrics is available 48-96 hours after online publication and is updated daily on week days.

Initial download of the metrics may take a while.