In silico characterization of somatic embryogenesis receptor like kinase (SERK) gene in oil palm (Elaeis guineensis Jacq.) and other crops

Open Access

Issue		BIO Web Conf. Volume 127, 2024 The International Conference and Workshop on Biotechnology (ICW Biotech 2024)


Article Number		01007
Number of page(s)		10
Section		Agricultural Biotechnology for Food Improvement and Production
DOI		https://doi.org/10.1051/bioconf/202412701007
Published online		13 September 2024

O. Karami, B. Aghavaisi, A. Mahmoudi Pour, Molecular aspects of somatic to embryogenic transition in plants. J. Chem. Biol. 2, 177–190 (2009). https://doi.org/10.1007/s12154-009-0028-4 [CrossRef] [PubMed] [Google Scholar]
M. aan den Toorn, C. Albrecht, S. de Vries, On the origin of SERKs: bioinformatics analysis of the somatic embryogenesis receptor kinases. Mol. Plant. 8, 762–782 (2015). https://doi.org/10.1016/J.MOLP.2015.03.015 [CrossRef] [Google Scholar]
M. O. Santos, F. J. L. Aragão, Role of SERK genes in plant environmental response. Plant Signal. Behav. 4, 1111–1113 (2009). https://doi.org/10.4161/psb.4.12.9900 [CrossRef] [Google Scholar]
S. H. Shiu, A. B. Bleecker, Expansion of the Receptor-Like Kinase/Pelle Gene Family and Receptor-Like Proteins in Arabidopsis. Plant Physiol. 132, 530–543 (2003). [CrossRef] [PubMed] [Google Scholar]
C. Albrecht, E. Russinova, V. Hecht, E. Baaijens, S. de Vries, The Arabidopsis thaliana SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASES1 and 2 control male sporogenesis. Plant Cell. 17, 3337–3349 (2005). https://doi.org/10.1105/tpc.105.036814 [CrossRef] [PubMed] [Google Scholar]
V. Hecht, J. P. Vielle-Calzada, M. V. Hartog, E. D. Schmidt, K. Boutilier, U. Grossniklaus, S. C. de Vries, The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture. Plant Physiol. 127, 803–816 (2001). [CrossRef] [PubMed] [Google Scholar]
V. Hecht, J. P. Vielle-Calzada, M. V. Hartog, E. D. L. Schmidt, K. Boutilier, U. Grossniklaus, S. C. de Vries, The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture. Plant Physiol. 127, 803–816 (2001). [CrossRef] [PubMed] [Google Scholar]
E. D. L. Schmidt, F. Guzzo, M. A. J. Toonen, S. C. de Vries, A leucine-rich repeat containing receptor-like kinase marks somatic plant cells competent to form embryos. Development. 124, 2049–2062 (1997). [Google Scholar]
M. N. Somleva, E. D. L. Schmidt, S. C. de Vries, Embryogenic cells in Dactylis glomerata L. (Poaceae) explants identified by cell tracking and by SERK expression. Plant Cell Rep. 19, 718–726 (2000). [CrossRef] [PubMed] [Google Scholar]
K. E. Nolan, R. R. Irwanto, R. J. Rose, Auxin up-regulates MtSERK1 expression in both Medicago truncatula root-forming and embryogenic cultures. Plant Physiol. 133, 218230 (2003). [CrossRef] [PubMed] [Google Scholar]
C. Thomas, D. Meyer, C. Himber, A. Steinmetz, Spatial expression of a sunflower SERK gene during induction of somatic embryogenesis and shoot organogenesis. Plant Physiol Biochem. 42, 35–42 (2004). [CrossRef] [PubMed] [Google Scholar]
C. Santa-Catarina, L. R. Hanai, M. C. Dornelas, A. M. Viana, E. I. S. Floh, SERK gene homolog expression, polyamines and amino acids associated with somatic embryogenic competence of Ocotea catharinensis Mez. (Lauraceae). Plant Cell Tissue Organ Cult. 79, 53–61 (2004). [CrossRef] [Google Scholar]
T. Shimada, T. Hirabayashi, T. Endo, H. Fujii, M. Kita, M. Omura, Isolation and characterization of the somatic embryogenesis receptor-like kinase gene homologue (CitSERK1) from Citrus unshiu Marc. Sci Hortic. 103, 233–238 (2005). [CrossRef] [Google Scholar]
M. de Oliveira Santos, E. Romano, K. S. C. Yotoko, M. L. P. Tinoco, B. B. A. Dias, F. J. L. Aragao, Characterisation of the cacao somatic embryogenesis receptor-like kinase (SERK) gene expressed during somatic embryogenesis. Plant Sci. 168, 723–729 (2005). [CrossRef] [Google Scholar]
Schellenbaum P, Jacques A, Maillot P, Bertsch C, Mazet F, Farine S, Walter B: Characterization of VvSERK1, VvSERK2, VvSERK3 and VvL1L genes and their expression during somatic embryogenesis of grapevine (Vitis vinifera L.). Plant Cell Rep. 27, 1799–1809 (2008). [CrossRef] [PubMed] [Google Scholar]
S. K. Sharma, S. Millam, I. Hein, G. J. Bryan, Cloning and molecular characterisation of a potato SERK gene transcriptionally induced during initiation of somatic embryogenesis. Planta. 228, 319–330 (2008). [CrossRef] [PubMed] [Google Scholar]
B. Singla, J. P. Khurana, P. Khurana, Characterization of three somatic embryogenesis receptor kinase genes from wheat, Triticum aestivum. Plant Cell Rep. 27, 833–843 (2008). [CrossRef] [PubMed] [Google Scholar]
M. T. Perez-Nunez, R. Souza, L. Saenz, J. L. Chan, J. J. Zuniga-Aguilar, C. Oropeza C, Detection of a SERK-like gene in coconut and analysis of its expression during the formation of embryogenic callus and somatic embryos. Plant Cell Rep. 28, 11–19 (2009). [CrossRef] [PubMed] [Google Scholar]
X. Huang, Y. Lu, J. T. Zhao, J. K. Chen, X. M. Dai, W. Xiao, Y. P. Chen, Y. F. Chen, X. L. Huang, MaSERK1 gene expression associated with somatic embryogenic competence and disease resistance response in banana (Musa spp.). Plant Mol Biol Rep. 28, 309–316 (2010). [CrossRef] [Google Scholar]
H. Zakizadeh, B. M. Stummann, H. Lutken, R. Muller, Isolation and characterization of four somatic embryogenesis receptor-like kinase (RhSERK) genes from miniature potted rose (Rosa hybrida cv. Linda). Plant Cell Tissue Organ Cult. 101, 331–338 (2010). [CrossRef] [Google Scholar]
E. D. Schmidt, F. Guzzo, M. A. Toonen, S. C. de Vries, A leucine-rich repeat containing receptor-like kinase marks somatic plant cells competent to form embryos. Development. 124, 2049–2062 (1997). [Google Scholar]
Y. Ito, K. Takaya, N. Kurata, Expression of SERK family receptor-like protein kinase genes in rice. Biochim. Biophys. Acta Gene Struct. Expr. 1730, 253–258 (2005). https://doi.org/10.1016/j.bbaexp.2005.06.007 [CrossRef] [Google Scholar]
A. Singh, P. Khurana, Ectopic expression of Triticum aestivum SERK genes (TaSERKs) control plant growth and development in Arabidopsis. Sci. Rep. 7, 12368 (2017). https://doi.org/10.1038/s41598-017-10038-1 [CrossRef] [Google Scholar]
Y. W. Huang, Y. J. Tsai, F. C. Chen, Characterization and expression analysis of somatic embryogenesis receptor-like kinase genes from Phalaenopsis. Genet. Mol. Res. 13, 10690–10703 (2014). https://doi.org/10.4238/2014.december.18.11 [CrossRef] [Google Scholar]
A. Cueva, L. Concia, R. Cella, Molecular characterization of a Cyrtochilum loxense Somatic Embryogenesis Receptor-like Kinase (SERK) gene expressed during somatic embryogenesis. Plant Cell Rep. 31, 1129–1139 (2012). https://doi.org/10.1007/s00299012-1236-x [CrossRef] [PubMed] [Google Scholar]
M. A. Ramírez-Mosqueda, L. G. Iglesias-Andreu, L. Sáenz, I. Córdova, Preliminary molecular detection of the somatic embryogenesis receptor-like kinase (VpSERK) and knotted-like homeobox (VpKNOX1) genes during in vitro morphogenesis of Vanilla planifolia Jacks. 3 Biotech. 8, 94–96 (2018). https://doi.org/10.1007/s13205-018-1112-7 [CrossRef] [PubMed] [Google Scholar]
S. Baudino, S. Hansen, R. Brettschneider, V. F. G. Hecht, T. Dresselhaus, H. Lörz, C. Dumas, P. M. Rogowsky, Molecular characterisation of two novel maize LRR receptorlike kinases, which belong to the SERK gene family. Planta. 213, 1–10 (2001). https://doi.org/10.1007/s004250000471 [CrossRef] [PubMed] [Google Scholar]
J. Ma, Y. He, Z. Hu, W. Xu, J. Xia, C. Guo, S. Lin, C. Chen, C. Wu, J. Zhang, Characterization of the third SERK gene in pineapple (Ananas comosus) and analysis of its expression and autophosphorylation activity in vitro. Genet. Mol. Biol. 37, 530–539 (2014). https://doi.org/10.1590/s1415-47572014000400009 [CrossRef] [PubMed] [Google Scholar]
F. Corpet, Multiple Sequence Alignment With Hierarchical Clustering. Nucl. Acids Res. 16 (22), 10881–10890 (1998). [Google Scholar]
L. B. Timothy, J. James, E. G. Charles, S. N. William, The MEME Suite. Nucleic Acids Research. 43 (W1), W39–W49 (2015). [Google Scholar]
K. Tamura, G. Stecher, S. Kumar, MEGA 11: Molecular Evolutionary Genetics Analysis Version 11. Mol. Biol. Evol. 38 (7) (2021). doi:10.1093/molbev/msab120 [Google Scholar]
J. Rozas, A. F. Mata, J. C. Sanchez-DelBarrio, S. Guiaro-Rico, P. Librado, S. E. Ramos Onsins, A. Sanchez-Gracia, DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets. Molecular Biology and Evolution. 34 (12), 3299–3302 (2017). https://doi.org/10.1093/molbev/msx248 [CrossRef] [PubMed] [Google Scholar]
Q. Ling, W. Huang, A. Baldwin, P. Jarvis, Chloroplast biogenesis is regulated by direct action of the ubiquitin-proteasome system. Science. 338 (6107), 655–9 (2012). doi: 10.1126/science.1225053. PMID: 23118188 [CrossRef] [PubMed] [Google Scholar]
Q. Ling, P. Jarvis, Regulation of Chloroplast Protein Import by the Ubiquitin E3 Ligase SP1 Is Important for Stress Tolerance in Plants. Curr Biol. 25 (19), 2527–34 (2015). doi: 10.1016/j.cub.2015.08.015 [Google Scholar]
B. M. Basnayake, D. Li, H. Zhang, G. Li, N. Virk, F. Song. Arabidopsis DAL1 and DAL2, two RING finger proteins homologous to Drosophila DIAP1, are involved in regulation of programmed cell death. Plant Cell Rep. 30 (1), 37–48 (2011). doi: 10.1007/s00299-010-0941-6 [CrossRef] [PubMed] [Google Scholar]
M. Regina Scarpin, Michael Busche, Ryan E Martinez, Lisa C Harper, Leonore Reiser, Dóra Szakonyi, Catharina Merchante, Ting Lan, Wei Xiong, Beixin Mo, Guiliang Tang, Xuemei Chen, Julia Bailey-Serres, Karen S Browning, Jacob O Brunkard, An updated nomenclature for plant ribosomal protein genes. The Plant Cell, 35 (2), 640–643 (2023). https://doi.org/10.1093/plcell/koac333 [CrossRef] [PubMed] [Google Scholar]

Current usage metrics show cumulative count of Article Views (full-text article views including HTML views, PDF and ePub downloads, according to the available data) and Abstracts Views on Vision4Press platform.

Data correspond to usage on the plateform after 2015. The current usage metrics is available 48-96 hours after online publication and is updated daily on week days.

Initial download of the metrics may take a while.